Dr. Anna Ramisch

CompBio Postdoc interested in HumanGenetics, NeuroEpigenomics & Addiction @unige_en

[Alena van Bömmel @aja_mys]

🔥🧬Finally out!🧬🔥 Check out our latest study in Nature Genetics uncovering a surprising phenomenon of convergent co-regulated promoters cocoProms https://t.co/z2qjKQUuNG
🧑‍🤝‍🧑I'm happy to be part of such an amazing team!
🧵

[Kerrin Small @kerrin_small]

Very excited to share that our manuscript on cis-eQTL analysis of adipose tissue gene expression in 2,344 samples is now out in Nature Genetics
https://t.co/tTeAeBxivn

See thread from lead author @SarahBrotman below

[Clint Miller @clintomics]

Delineating the effective use of self-supervised learning in single-cell genomics ⁦@NatMachIntell⁩ ⁦@fabian_theis⁩ https://t.co/baaEscxdGp

[Bjørt Katrinardóttir Kragesteen @Katrinardottir]

I'm very excited to share that I’ve started as a group leader @karolinskainst. I am looking for curious, enthusiastic and collaborative postdocs and assistants (pre-PhD) to join us to decipher regulation of hypoxia cell states that govern systems oxygen homeostasis 1/3

[Clint Miller @clintomics]

New benchmarking study of 8 pipelines and 5 widely used methods for scATAC data analysis..includes embedding, graph and partition-based metrics and useful recommendations by data complexity and downstream tasks. Snakemake workflow: https://t.co/XxZnbBUZWp https://t.co/x9MH9Kbwpg

[Dr. Anna Ramisch @AnnaRamisch]

@aja_mys Thank you, Alena :)

[Dr. Anna Ramisch @AnnaRamisch]

So happy that our preprint is finally out! If you're interested in the advantages of long-read direct RNA sequencing in population studies, this is for you.

[Aline Réal @aline_real25]

I am excited to share our new preprint with @anavinuela, @AnnaRamisch, @arnsbr, and @dermitzakis! We used direct RNA long-read seq on 60 LCLs from the 1000 Genomes Project to study genetic regulation of transcript abundance & RNA modifications (m6A).

https://t.co/pG2QiS4psN.

[Dr. Anna Ramisch @AnnaRamisch]

@i_jerko Thank you, Ivana 😊

[Andrew Brown @arnsbr]

Really happy for @aline_real25 to be getting this out. Major implication for me is I've always assumed gwas hits will be explained by expression as it has to mediate then. But here @aline_real25 shows these expression effects can take many forms, not all picked up by common tech

[Aline Réal @aline_real25]

I am excited to share our new preprint with @anavinuela, @AnnaRamisch, @arnsbr, and @dermitzakis! We used direct RNA long-read seq on 60 LCLs from the 1000 Genomes Project to study genetic regulation of transcript abundance & RNA modifications (m6A).

https://t.co/pG2QiS4psN.

[Denis Duboule @Duboule]

We are looking for a bioinformatician @cdf1530 @CirbCdf in Paris to analyse genomic/epigenetic datasets🧬 in the context of a synergy @ERC_Research long term program. See below and apply😎 RT🙏

[Madison (Honer) Lineberger @madisonahoner]

‼️New Epigenetics Review ‼️

Read here at @GenesDev where we discuss brief history of various epigenetic modulator classes 🧬, their links to multiple disease types 😷, and their potential for (combined or novel) therapeutic targeting 💊!
https://t.co/XrV942wPpr

[Simon Braun @smgbraun]

Check out our lab's recent #preprint by Hanna Schwaemmle and our collaborators @unige_en. We asked how do cells assemble functional SWI/SNF chromatin remodeling complexes? The key is to make just the right amount of each subunit!
https://t.co/3tcgezCYgC

[Université de Genève @UNIGEnews]

Des scientifiques de l’#UNIGE ont identifié les séquences génétiques régulant l’activité des gènes responsables de la croissance osseuse.
@guillaumeandrey @F_Darbellay
#science #médecine #recherche #génétique
https://t.co/2MhY5gg3LY

[Etienne Sollier @EtienneSollier]

Figeno, my visualization tool for genomics🎨🧬, is now published in Bioinformatics! https://t.co/ln22SewiZ7
It can generate publication-quality figures for sequencing data along genomic coordinates: bigwig, HiC, @nanopore data with base modifications, and WGS with CNAs and SVs.

[Evgeny Kvon @evgenykvon]

How do enhancers work over distances that sometimes exceed megabases? Excited to share our work led by @gracecbower where we uncover a unique sequence signature globally associated with long-range enhancer-promoter interactions in developing limb buds: https://t.co/n0p7BdxSdq 1/

[Nadav Ahituv @NadavAhituv]

Characterizing >100,000 sequences in primary neurons and organoids and deep learning to decode regulatory activity. Amazing work from @Chengyu_Deng_, @seawhalen, Katie Pollard, @LabNowakowski and others as part of #PsychENCODE in @ScienceMagazine.

https://t.co/Y8oPRkqVVF

[🇲🇽 Leonardo Collado-Torres @lcolladotor]

Ana @anavinuela is motivating us to look at eQTLs beyond gene counts to transcript counts from long read sequencing data

Ana et al used @oxfordnanopore to generate 🧬 data

#BoG24

[Tomàs Montserrat Ayuso @tmontsay]

Excited to share with the single-cell community the most recent work of @tmontsay and @AEsteveCodina from @cnag_eu, something we think will be a game-changer in #scRNAseq quality control: https://t.co/MeVrelcG9n @biorxivpreprint
Get ready for the tweetorial!
1/10

[Zhen Miao @ZhenMiao2]

Inspired by @lpachter and team's exploration of scRNA-seq pipelines, we face similar challenges in scATAC-seq, only magnified! After 5 years of tackling these inconsistencies with my advisor @JunhyongKim , Here is a summary (and some solutions😃) 1/n #Genomics #Bioinformatics