Dave Rogers

Partner @CleverCanary.

[UCSC Genome Browser @GenomeBrowser]

We are excited to announce the release of the Varaico tracks for human assemblies hg38 and hg19. Varaico stands for "Variation Research Advancing Insight in Complex Organisms". Varaico was created using literature mining, similar to AVADA.

Learn more at:
https://t.co/YeJUn7vJnL

[Michael Schatz @mike_schatz]

So long San Diego! Here’s my opinionated meeting report from #PAG2025 | #PAG32. What else did I miss???

[Mo Lotfollahi @mo_lotfollahi]

Students when they see new one

[Dave Rogers @_DaveRogers]

@AGItechgonewild @bindureddy Yea, 7 has a hole in it.

[Dave Rogers @_DaveRogers]

@levie Well, does it matter if the company is more efficient at developing software that is now obsolete because of AI? Many (most?) companies product backlog just got destroyed and they may find it difficult / impossible to develop new AI based products while supporting current ones.

[Dave Rogers @_DaveRogers]

So cool!

[Latif Nasser @latifnasser]

Last January, I noticed something peculiar in my 2yo’s bedroom that - after a year of obsessive reporting - led me to a profound cosmic revelation about what’s even possible in our universe. A 🧵.

[Alma Andersson @aalmaander]

🚨 Alert 🚨 Any1 with an interest in the intersectional space of AI/ML and omics-related stuff should have a look at this workshop 👉 https://t.co/zTFwdEzEw5
It's designed to bring people from both domains together and has a stellar committee! I'm super stoked 🙌🙌

[Stephen Quake @StephenQuake]

CZI plans to build the computing power needed to create predictive models of cells at scale. We’re at a critical moment where AI tools, in combination with annotated high-quality data, can help us accelerate our understanding of cell and systems biology.

[YangJoon Kim @yangjoonkim]

Excited to present a preprint about how to annotate cell types in single-cell multi-omics datasets using CZ #cellxgene tools. This is a great collaboration between Data Science and Genomics platforms in @czbiohub SF, and @cziscience single-cell team. https://t.co/MSgmRWrq3o
1/n

[Teichlab @teichlab]

We are pleased to announce that our paper on CellHint was published today in @CellCellPress. Here, we describe this new tool and how it can harmonise single-cell data to help drive biological research. https://t.co/RTcWY91yVM

[Tony Zador @TonyZador]

NeuroAI Summer Internships at CSHL!

Please retweet!

[Pablo García-Nieto, Ph.D. @Paedugar]

New to CZ #CELLxGENE Census: A normalized expression layer & gene and cell stats for all 33M cells!

In Python and R you can work with #SingleCell CPM values and quickly filter genes and cells, for example get all cells with more than 100 expressed genes.

https://t.co/PK8CRlMSRQ

[AnVIL @useAnVIL]

The AnVIL Team is excited to announce a data release from the ALS Compute consortia! Over 7,000 WGS samples have been released, and approximately 35,000 control samples have been included in the harmonization efforts (dbGaP:phs003184). Learn more at https://t.co/3HqNulHx4G.

[Michael Schatz @mike_schatz]

Just over a week to go for JXTX Scholarships for @CSHL Genome Informatics! The application process is lightweight and just needs a short statement of goals in addition to your conf abstract. Please help spread the word! https://t.co/P55pGft2MB

[Jim Fan @DrJimFan]

Original post from the author:

https://t.co/6H0QxrtMkw

[UC Santa Cruz Genomics Institute @ucscgenomics]

A new blood test for noncoding RNA significantly improves cancer detection! 🎗️ A novel liquid biopsy technology developed by @ucsc @ProfDanielKim's lab leverages RNA “dark matter” to enhance cancer diagnosis. Read more: https://t.co/RX7nWQ6AZL

[Mo Lotfollahi @mo_lotfollahi]

Interesting take on cell type vs state https://t.co/txmPj3H6aS from @TreutleinLab @GrayCampLab

[UC Santa Cruz Genomics Institute @ucscgenomics]

We have a complete #Ychromosome 🎉 It was the last human chromosome left unsequenced, but now the #T2Tconsortium led by UCSC & @genome_gov has finished it, revealing 41 additional genes! This will aid research on fertility and, believe it or not, bacteria. https://t.co/3nuRD3fVDq

[Haniffa Lab @HaniffaLab]

New in @Science! 🎊

Our #Developmental @humancellatlas study (https://t.co/hzDiKMWgCg) uses #SingleCell profiling to map the human yolk sac, pivotal for embryonic survival & first prenatal blood and immune cells. Data-portal: https://t.co/8RZsyqgNO5 👈

[1/12] 🎥 by @megumi4952

[Lior Pachter @lpachter]

In new work, @LambdaMoses et al. introduce the Voyager platform for spatial and non-spatial 'omics analysis:
🚴‍♀️ Builds on the geospatial statistics tradition
🚴‍♀️ Addresses discordance between Seurat & Scanpy
🚴‍♀️ Engineered in R (@Bioconductor) & Python
https://t.co/LR9hZdNRxK 1/🧵