Florian Schmidt

Research associate at the Genome Institute of Singapore @astar_gis

[Marcel Schulz - @[email protected] @TheMarcelSchulz]

Reunion of old and new students at #ISMBECCB2023 looking forward to exciting discussions over the next days @tim_warwick @nbaumgarten_ @fatemeh383 @ranjankrmaji @fschmidt92 @sivarajank @shamimashrafiy

[Florian Schmidt @fschmidt92]

I am very happy to finally see one of my major projects form my time at GIS published. Check out our article on TKI resistance in CML.

[Vaidehikrishnan @Vaidehikrishna4]

We are very happy to share our latest #singlecell study on identifying the features of primary tyrosine kinase inhibitor (TKI) resistance at the time of chronic myeloid leukemia (#CML) diagnosis/1

[Costa Lab - @costalab.bsky.social @vanvanka123]

Interesting work form @TheMarcelSchulz on learning triple helix formation rules from Triplex-seq experiments .

https://t.co/MXW2xismmg

[Shyam Prabhakar Lab @shyam_lab]

#Fluoxetine (#Prozac) changes so many genes in so many brain regions. Mechanism(s) of action are dizzyingly complex, but some promising themes emerge👇. Long-term collab with @meaneylab et al. Large integrative omics study heroically led by @braincrank_nr. @astar_gis #depression

[Alex Ritter, PhD @AlexRitterPhD]

Small but mighty! This is a video of a killer T cell of the immune system destroying a monstrous ovarian cancer cell. I recently captured this data on a spinning disc confocal microscope.

[Florian Schmidt @fschmidt92]

@scherermich @dfg_public @larsplus @CRGenomica Congratulations and wishing you a lot of interesting projects!

[Florian Schmidt @fschmidt92]

@dr_amarx @CISPA @ETH_AI_Center Best of luck and have a great time ahead!

[Daniela Witten @daniela_witten]

Finally --- the 2nd edition of ISLR is out!!!!🥳🎉🪅🍾

Well, sort of. 🙄It's "published", but due to shortages in the global paper supply, hard copies won't be available for a bit longer 😢😭🤦‍♀️

You can pre-order a hard copy from Springer/Amazon, & **download the pdf today**! 1/

[Shyam Prabhakar Lab @shyam_lab]

Excited to share #RCA2, our scaled-up supervised clustering algorithm for scRNA-seq data- https://t.co/JsvrddMMmc @fschmidt92 @bbbranjan @AminHonardoost @braincrank_nr

[Florian Schmidt @fschmidt92]

Are you interested in single cell biology and algorithmics? Join us for the "Single Cell and Spatial Data Analysis" Special Session on July 30 as part of 2021 ISMB/ECCB. We're accepting abstracts for talks/posters till May 31. Check for details here: https://t.co/6MnPPsqHN1

[ISCB Student Council @iscbsc]

The talk on 4th May 2020 at 9 am Central time will be by Florian Schmidt from @astar_gis. Watch it here -
https://t.co/ZSmVQQ7tu1
Please add to your calendar - https://t.co/Is2d06o46y
The talk will be about Robust clustering of scRNA-seq data using reference component analysis!

[Florian Schmidt @fschmidt92]

Thanks to @bbbranjan and everyone else involved from @shyam_lab at @astar_gis for working with me on this great contribution to improve clustering of single cells, which is now available at BMC Bioinformatics.

[Bobby Ranjan @bbbranjan]

Mine and @fschmidt92's collaborative work - scConsensus - is finally out in BMC Bioinformatics! Huge thanks to Wenjie, Jinyu, @AminHonardoost, @braincrank_nr, Joanna and @shyam_lab! Also grateful to the reviewers for helping us improve the manuscript.

https://t.co/XCUNIoxgSG

[A*STAR Genome Institute of Singapore (A*STAR GIS) @astar_gis]

GIS is starting a new series of monthly scientific talks “Genome: The GIS Speaker Series”. For our 1st session on 7 April, 9am SGT, we invited Dr Sarah A Tishkoff to start this series with her talk on “Genomic Evolution & Adaptation in Africa: Implications for Health & Disease”.

[EpigenomeInformatics @EpigenomeI]

Eager to engage in cutting-edge research in computational #epigenomics in a lab starting at @Saar_Uni (Germany)? Interested in a #bioinformatics #PhD or #postdoc? Check out this opportunity!
#epigenetics #singlecell #AI

https://t.co/Uusvkb6DhG

[Nature Computational Science @NatComputSci]

A manuscript by @scherermich, @fschmidt92, @the___olga, @janbaumbach, @itisalist and colleagues reviews state-of-the-art computational methods to better understand the mechanisms of epigenetic regulation, and discusses the ongoing challenges in the field. https://t.co/dgklI3Wd9b

[Florian Schmidt @fschmidt92]

@NatComputSci @scherermich @the___olga @janbaumbach @itisalist Thanks to all collaborators for this very nice review article on computational epigenomics. Go check it out!

[Florian Schmidt @fschmidt92]

The preprint on RCA2, a supervised clustering algorithm for single cell RNA-seq data is available on bioRxiv. Thanks to everyone who contributed form @shyam_lab at @astar_gis especially at @bbbranjan.

https://t.co/lI0aRoUMrx

[Single Cell Omics Germany (SCOG) @singlecellomics]

Are you interested in #SingleCell #epigenomics🤓? Register for our upcoming workshop on Nov 17 and learn about the latest findings and developments in the field from our experts during interesting talks 🤩👉more info & registration: https://t.co/wyBYxZzokn

[Tom Kelly ケリー・トム 🏳️‍🌈 @tomkXY]

@fschmidt92 (@astar_gis): RCA2 is a scalable robust unsupervised clustering technique that uses cell-cell correlations to avoid batch effects

https://t.co/aGKqzUexCQ

#HCAasia2020

[Marcel Schulz - @[email protected] @TheMarcelSchulz]

Widespread effects of DNA methylation and intra-motif dependencies revealed by novel transcript factor binding models https://t.co/bbjJSmCiWV