Víctor A. López-Agudelo

Postdoc in Bioinformatics at SystemsImmunology - IKMB - UKSH.

[Nature Microbiology @NatureMicrobiol]

Nice new paper in @Nature on interactions between genetic variation in host and microbiota https://t.co/z49CUjhP7F

[GutMicrobiota Health @GMFHx]

Specific gut microbiome profiles could offer potential benefits for patients with IBD.

New findings in @AGA_Gastro reveal the gut microbiota in IBD has increased Enterobacteriaceae as well as metabolites such as carnitine and acylcarnitines:

https://t.co/EZB5ktmTBQ

[KorenLab @KorenLab]

And it's out "The maternal gut microbiome in pregnancy: implications for the developing immune system". Thank you for a fun writing experience @mcarmen_collado @LizaKonnikova @MysorekarLab @BrodinPetter @NatRevGastroHep @biumedicine https://t.co/0wArnKwpYy

[UC San Diego Systems Biology @ucsd_sbrg]

Analysis of 54,000+ genomes suggests that the ancestral species of all bacteria carefully maintained most of the essential biological functions observed across its modern descendants. https://t.co/bqKsEwmSn3 @UCSDJacobs @NIAIDFunding

[Lisa Lendway, she/her @lisalendway]

Reminder: if you ever want to learn how to use git and GitHub in R, @JennyBryan has the BEST resource: https://t.co/ooRv9YTCIJ. Even though I use Azure DevOps at work, I've still found it helpful. Just did some stuff in the terminal that WORKED!

[Bioinformatics and Data Analytics Team (BioDatA) @DraegerLab]

Gwendolyn Gusak presents three new strain-specific genome-scale metabolic models of 𝘚𝘵𝘢𝘱𝘩𝘺𝘭𝘰𝘤𝘰𝘤𝘤𝘶𝘴 𝘩𝘢𝘦𝘮𝘰𝘭𝘺𝘵𝘪𝘤𝘶𝘴 at this year’s #Bioinformatics and #MedicalInformatics Day #TüBMI 2023 of @uni_tue. Her work was a use case of the software tool refineGEMs.

[Katie Guzzetta 🌻 @ktguzz]

"Early-life differences in the #GutMicrobiota composition and functionality of infants at elevated likelihood of developing #Autism spectrum disorder"

- the newest research by @HeijtzRochellys and team! Can't wait to read it! 🙌

https://t.co/LxJlJjrJzn

[Chenxin Li, PhD (@chenxinli2.bsky.social) @ChenxinLi2]

You can make an entire figure in R using the patchwork package. A tutorial is available at my GitHub to generate this exact figure (https://t.co/foCcoTBPAM). It covers controlling layout, relative heights/widths of panels, hierarchical assembly, and position of letter labels.

[PMI @medinflame]

At the international symposium of @DFG_miTarget yesterday around 100 participants discussed and exchanged about the role of the #microbiome in #IBD. #miTargetKiel #precisionmedicine #inflammation @kieluni @UKSH_KI_HL https://t.co/cN6GiErmaD

[Rosana Ferrero 📈📊🙌 @RosanaFerrero]

👋 Adiós #barbarplots, Hola raincloud plots😎
👉 ggdist @CedScherer https://t.co/7JsFv3VPDX
🤟 ggstatsplot @patilindrajeets https://t.co/236e4dP9XN
🖖 pirateplot @YaRrrBook https://t.co/Gyk0lNB37M
#dataviz #RStats #datavisualization #analytics #datascience #stats #data #BigData

[PMI @medinflame]

We are thrilled that our Spokesperson Stefan Schreiber @UKSH_KI_HL @kieluni is No 1 of the Medical Scientists in Germany in the new Ranking of @guide2research 🥳https://t.co/i9d2afq7ud #precisionmedicine #inflammation

[Rahul Satija @satijalab]

We are excited to release Seurat v5- with new methods for multimodal, spatially resolved, and massively scalable single-cell analysis. https://t.co/7BMGF7x1wV

[Segata Lab @cibiocm]

Our review paper "Cardiometabolic health, diet and the gut microbiome: a meta-omics perspective" today in Nature Medicine @NatureMedicine https://t.co/vzlUJlbmSm Had fun writing it with such great team @MireiaVallesc Cristina Menni @saraheeberry
Ana Valdes @timspector @nsegata

[nf-core @nf_core]

Pipeline release! nf-core/ampliseq v2.5.0 (Amplicon sequencing analysis workflow using DADA2 and QIIME2)

See the changelog: https://t.co/HGxBY7zSSL

[Segata Lab @cibiocm]

MetaPhlAn 4 is published today OA in Nature Biotechnology @NatureBiotech https://t.co/QEwwx08nVo We added GTDB output, improved performance and comparative analyses w.r.t. the preprint version. Huge thanks to @AitorBM for the eroic effort and to all @nsegata and @hutlab

[Huiluo Cao 曹慧荦 @hlcao]

gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota | Nature Biotechnology https://t.co/lsIIie3ofN

[Harry Sokol @h_sokol]

Microbiota-induced active translocation of peptidoglycan across the intestinal barrier dictates its within-host dissemination https://t.co/xeDDFu6qwc

[Segata Lab @cibiocm]

"The person-to-person transmission landscape of the gut and oral microbiomes". Our work on microbiome stransmission published today open-access in @Nature! Fantastic work @MireiaVallesc, the whole @cibiocm group @CIBIO_UniTrento and all the collaborators! https://t.co/EB4TFlIDIh

[Microbiome Virtual International Forum @MicrobiomeVIF]

The first #MVIF of the new year is in 1⃣week!🥳

⭐️Keynote talk by @BorkLab

Selected talks by
⭐️@WChangzhi
⭐️@HRoager
⭐️@Kenyum_b
⭐️Nitzan Soffer

This event is proudly supported by @illumina🙌 Join Gather to discuss their latest technologies!

Register https://t.co/TzOoSsBf6I