Anna G. Green

[Anna G. Green @AnnaGGre]

I am so thrilled to announce that I am starting as an Assistant Professor this fall at UMass Amherst CICS @manningcics. Our research group will build and apply computational models for bacterial genomics, focused on antibiotic resistance and machine learning. Recruiting soon!

[Jatin Nainani @jatin_n0]

Can protein LMs reveal scientific knowledge? We start by asking how pLMs turn sequences into structure signals. We map a contact prediction circuit: early motif features gate later domain features. Spurious or science? We can now test. 🧵(1 of N)

[Jonathan Frazer @Jonnygfrazer]

Eli is one of the most talented scientists I have ever met. Whoever his future colleagues are, they are a lucky bunch.

[Hamed Zamani @HamedZamani]

@manningcics at @UMassAmherst is planning to hire two tenure-track faculty in #NLProc at Assistant / Associate Professor levels.

Job posting: https://t.co/ZTImEqtEtO

Applications are due on Dec. 1st.

If you have any questions, please feel free to reach out!

Please RT!

[Zamin Iqbal @ZaminIqbal]

If you're interested in a PhD applying stat/AI methods to prediction of phage susceptibility & cocktail design with me, @edzewestra + @StinekevanHoute , we're advertising an MRC funded project - deadline 4th November. International students welcome!

https://t.co/4sQabeK7va

[Anna G. Green @AnnaGGre]

Excited to attend!

[Marinka Zitnik @marinkazitnik]

Join us for the AI for Genomics and Health Conference, the 2024 @Harvard PQG Conference, to discuss advances of AI in translational medicine and health

https://t.co/cRUSPhTuUH

Fantastic co-organizers @james_y_zou @elhamazizi @XihongLin @jmuiuc @BoWang87 K Vogan

@HarvardChanSPH @harvardmed @HarvardDBMI @KempnerInst @harvard_data @broadinstitute

[Hertz Foundation @HertzFoundation]

The 2025 Hertz Fellowship application is open! In addition to 5 years of funding, Hertz Fellows join a community of peers, including some of the nation’s most noted #science & #technology leaders. Start your application today! https://t.co/YBbF6acnFF

[Cheryl P Andam @CheAndamMicro]

Super happy that our recent paper on bloodstream Klebsiella is featured in @NatureComms Editors' Highlights in Microbiology and Infectious Diseases https://t.co/RWlrphRl1W

[Yunha Hwang @Micro_Yunha]

Introducing the 😱OMG dataset and 🤖gLM2! OMG is a massive Open MetaGenomic corpus totaling 3.1Tbp of data and 3.3B proteins. We train gLM2, the first mixed-modality genomic language model, on OMG. 1/🧵 #BioML #AI4Science

[Jan-Willem Veening @JWVeening]

Happy to announce PneumoBrowse 2! Access it here: https://t.co/nyx9188snS and read the preprint here:
https://t.co/jfQN9yxGN5

[ASM @ASMicrobiology]

Does composting spread antibiotic resistance? Researchers found that the release and transmission of extracellular antibiotic resistant genes (ARGs) during cow manure composting is facilitated by heat and the lysis of bacteria by phages. https://t.co/QTASKf7At8 @AppEnvMicro

[MLSB (in San Diego + Copenhagen) @workshopmlsb]

The MLSB 2024 call for papers is live at https://t.co/wv9C4we1CQ !
New this year: we're excited to use MLSB to highlight importance of benchmarks. We'll have 2 tracks for models evaluated on https://t.co/X34vSEgXA4 / https://t.co/0tTgKxEK4m from @vant_ai @nvidia @MIT_CSAIL !

[GAMA Miguel Angel 🐦‍⬛🔑 @miangoar]

Great review about the "AlphaFold Mania" 🔥:
- structure prediction
- remote homology relationships
- molecular replacement
- Interactomes
- variant effect predictor
- conformational sampling
- and much more

AlphaFold two years on - validation and impact
https://t.co/7WWIBVU9O3

[Leo Zang @LeoTZ03]

Accurate prediction of protein function using statistics-informed graph networks | @NatureComms
- PhiGnet, uses evolutionary couplings (EVCs) and residue communities (RCs) with Dual-Channel Graph Convolutional Networks. Embed sequences via ESM-1b
- Use Grad-CAM method computes activation scores for functional residues Interpretability
Link: https://t.co/iUHrqbtV0j

[Anna G. Green @AnnaGGre]

very cool work showing that different TB lineages are adapted to different human populations, congrats @iMGroschel and @MahaFarhat

[DBMI at Harvard Med @HarvardDBMI]

Which Strains of Tuberculosis Are the Most Infectious?
New research from DBMI's @MahaFarhat and @iMGroschel in @NatureMicrobiol shows shared geographic origin between TB strain and human host could amplify risk for infection. Story via @harvardmed. https://t.co/g85G5iw6Ys

[Rayan Chikhi @RayanChikhi]

Today we’re excited to freely share an early-version of, perhaps, the world’s most expansive genetics dataset: Logan.

#bioinformatics #petabase #genetics #genomics #openscience

https://t.co/CQSBmvn7se

[Yunha Hwang @Micro_Yunha]

It's great to see more work being done on *contextualizing* protein embeddings with genomic context information! Check out this new viral gLM work by @pCodyM et al!🎉

[Huiluo Cao 曹慧荦 @hlcao]

Blood culture-free ultra-rapid antimicrobial susceptibility testing | Nature https://t.co/7KTUiY0wW0

[Leo Zang @LeoTZ03]

List of Papers using Deep Learning for Protein Design (by @PeldomZ )

https://t.co/jYEbYMh0e0

[Anna G. Green @AnnaGGre]

@implosian @baym @HealthNYGov Congratulations! Excited to hear more about phages!