Olle Holmberg

I am a Ph.D. student at the machine learning group at the Institute of computational biology, Helmholtz Center Munich. My interests are developing machine learn

[Valentin Koch @ValentinKoch_]

Our innovation grant-winning study on AI-based OCT analysis post-PCI is on medRxiv! DeepNeo is a tool for neointima & stent analysis with a GUI (⬇️) ! It classifies neoint. w same acc as experts + strong segmentation of lumen, stent and neoint.🔬 1/6
https://t.co/AfjwaG3RC9

[Giovanni Palla @g_palla1]

🍤 + 🌌 = 🦑
True team effort with @HannahSpitzer1 Michal Klein @davidsebfischer Anna Schaar @KuemmerleLouis @Koncopd @ilibarra @holmberg_olle @ivirshup @MohammadLotfol1 @_sabrinarichter @fabian_theis
🧵 1/

[Fabian Theis @fabian_theis]

Excited that our paper on data-efficient self-supervised learning is out @NatMachIntell. Led by @holmberg_olle, we apply this to Diabetic Retinopathy screening, needing 75% less annotations & 200x fewer params to reach human performance than before.
https://t.co/UIy33Htkz0

[Fabian Theis @fabian_theis]

Want to map #scRNA-seq data on a reference atlas without sharing raw data? Plz check out single-cell architectural surgery (scArches) - led by @MohammadLotfol1, we use transfer learning for efficient query to reference integration. https://t.co/pvl6alBXoI https://t.co/HEO2RPikJT

[Fabian Theis @fabian_theis]

Really happy that our paper on the proteome landscape across 100 species is out @Nature. Led by @labs_mann, we contributed a machine-learning based exploration of that landscape using a bidirectional LSTM, and robustly predicted a peptide's retention time. https://t.co/zFNRJJgY3e

[Fabian Theis @fabian_theis]

Excited to share our work on benchmarking large-scale data integration in single-cell genomics. Led by @MDLuecken and starting from an internal hackathon with @colomemaria_epi, we compare methods & preprocessing using a series of metrics and scenarios, see https://t.co/wAxIq0GTRm

[Fabian Theis @fabian_theis]

Excited to give a talk at the #AI commission of the @bundestag together with @PhilippHennig5

[hardmaru @hardmaru]

Even ants cannot escape geopolitics

[Olle Holmberg @holmberg_olle]

@goodfellow_ian Cool!

[Ian Goodfellow @goodfellow_ian]

The quiet semisupervised revolution continues

[Lex Fridman @lexfridman]

Here's one of my favorite poems by Charles Bukowski, titled Nirvana, about the fleeting moments of magic in life. I've written many songs, most never shared. I hope to change that. Me playing covers & reading this poem is a step toward it. Happy holidays. https://t.co/IYw0ohfzB2

[Helmholtz Munich | @HelmholtzMunich @HelmholtzMunich]

Excellent news: @europeanunion funds six of our research projects with more than 8 million Euros within the program for research and innovation @EU_H2020. @fabian_theis @JohBeckers @ProtzerUlrike @LickertHeiko @SchillerLab @DrukkerMicha #H2020 https://t.co/sgwUmUNxtr

[Aäron van den Oord @avdnoord]

Unsupervised pre-training now outperforms supervised learning on ImageNet for any data regime (see figure) and also for transfer learning to Pascal VOC object detection
https://t.co/MvRu3dqTxk

[Fabian Theis @fabian_theis]

How to deal with costly annotation to apply #DeepLearning to #medicalimaging? In a work led by @holmberg_olle and Niklas Köhler, we leverage self-supervised learning to predict retinal depth from fundus alone, together with @LMU_Muenchen eye clinic. https://t.co/AJct0AdnNK

[Fabian Theis @fabian_theis]

Excited to share our scVelo manuscript - led by @VolkerBergen and @falexwolf, we generalize the beautiful RNA velocity concept from @KharchenkoLab and @slinnarsson to transient cell states through dynamical modeling. https://t.co/Dv11ChjUGW and https://t.co/Dl6oR41VxG #scRNAseq

[Nature Careers @NatureCareers]

What makes a great paper? Julia Eckhoft shares her advice on writing a great research paper to please readers, editors and yourself.
https://t.co/V57H3Y1FJt
@NatureComms

[Gary Marcus @GaryMarcus]

Open discussion of differing world views is essential for progress. Always eager to have my ideas challenged.

I invite ⁦@geoffreyhinton⁩ to help raise level of discussion via public conversation @letterwiki

RT if you would like to see this happen https://t.co/S3EEKffAup

[Fabian Theis @fabian_theis]

Exciting junior group leader positions in #AI at @helmholtz_ai!

[Christoph Feest @FeestChristoph]

👉budding scientist in #MachineLearning and #ArtificialIntelligence with bold and unconventional💡ideas? ambitious? non-incremental? check our @helmholtz_ai @fabian_theis latest opening https://t.co/to5eXSbIAT

[Fabian Theis @fabian_theis]

Excited to share our recent work on generative modeling for unpaired data using a ‚transformer VAE’. Led by @MohammadLotfol1 and @falexwolf, we extend scGen using a conditional VAE together with an MMD regularization. Applications for images and scRNA-seq. https://t.co/YNqL37lZqV