Ziynet Nesibe Kesimoglu

#ComputerScience #ComputationalBiology #GraphRepresentationLearning #MultiomicsIntegration

[Bioinformatics Advances @BioinfoAdv]

This paper was a collaborative effort from @marinkazitnik @_michellemli @aydin_wells @GysiDeisy @compbiologist @t_m_murali @pedjagogue @sroyyors @BaudotAnais @bozdags @kapil_devkota_ @anthonygitter @sargoshoe @piehiram @Meng_CS @ziynet_ @koyuturkm @jmuiuc @xanderpico @NatasaPrzulj @benjraphael @anna_m_ritz @StructBioinf @profmonasingh @dkslonim @haiyuanyu @ProfMilenkovic

[Ziynet Nesibe Kesimoglu @ziynet_]

Happy to be a part of it and the workshop!

[Dr. Tijana Milenkovic @ProfMilenkovic]

Our review+perspective paper on "Current and future directions in network biology" is online (https://t.co/CbgF5Wir5Z). This has been a Herculean effort by many co-authors, thank you all! Special thanks to @marinkazitnik, @_michellemli, @aydin_wells, and all section coordinators.

[bioRxiv @biorxivpreprint]

SUPREME: A cancer subtype prediction methodology integrating multiomics data using Graph Convolutional Neural Network https://t.co/kY2sArmoq1 #bioRxiv

[Ziynet Nesibe Kesimoglu @ziynet_]

@domarp_cb @iscb @MlcsbC @marinkazitnik @CataVallejosM Thank you! Sure, I am happy to discuss. I will be in the same COSI today.

[Ziynet Nesibe Kesimoglu @ziynet_]

Excited to give a talk at @iscb #ISMB2022 conference @MlcsbC COSI tomorrow at 11:45am!

SUPREME: a cancer subtype prediction methodology integrating multiomics data using Graph Convolutional Neural Network

Also come & visit my poster today (W-071)! @marinkazitnik @CataVallejosM

[Ziynet Nesibe Kesimoglu @ziynet_]

@kemda2 @iscb @MlcsbC @marinkazitnik @CataVallejosM Thank you 🥰

[Ziynet Nesibe Kesimoglu @ziynet_]

#OxML2022 summer school has just started! Happy to be a part of it!

[Dr. Tijana Milenkovic @ProfMilenkovic]

Discussing the future of network biology at the beautiful Notre Dame campus.

[Mark Gerstein @MarkGerstein]

Z Kesimoglu (in the lab of @bozdags) at @ACM_BCB gives a nice overview of how GNNs can be used to integrate many types of genomic data for cancer subtype prediction. Basically, you build a GNN for each genomic feature & then concatenate the embeddings.

[Ziynet Nesibe Kesimoglu @ziynet_]

"All models are wrong, but some are useful." #GLBIO19

[Ziynet Nesibe Kesimoglu @ziynet_]

While reviewing a paper, check that it is new + interesting + correct. #ThreeMainCriteria

[Ziynet Nesibe Kesimoglu @ziynet_]

"Enough with the low-hanging fruit. How about some slow-moving meat?" #ISMB2018

[Ziynet Nesibe Kesimoglu @ziynet_]

Take the challenge! #WIDS2018 #WIDSdatathon Woman In Data Science. ps: Teams have to be 50% women ;)

[Ziynet Nesibe Kesimoglu @ziynet_]

"The user is going to pick dancing pigs over security every time" Bruce Schneier

[Ziynet Nesibe Kesimoglu @ziynet_]

5-year old kid becomes one of Microsoft's "March 2014 Security Researchers". Kristoffer Wilhelm von Hassel, congratz. #SpaceSpaceSpaceEnter

[Ziynet Nesibe Kesimoglu @ziynet_]

OpenSSL's Heartbeat protocol turns into Heartbleed bug. #PoorOpenSSL

[Ziynet Nesibe Kesimoglu @ziynet_]

Don't grieve. Anything you lose comes round in another form. [Mevlana Jelaluddin Rumi]

[Ziynet Nesibe Kesimoglu @ziynet_]

"you only live once. but if you work it right, once is enough."
Joe E. Lewis

[Ziynet Nesibe Kesimoglu @ziynet_]

hadi bakalım twitter serüveni başlasınn.
Let's get it started!