Li Song

毛利元光. Assistant Prof.. Bioinfo, algorithms. @BioMedDataSci. PostDoc @XShirleyLiu @lh3lh3 @dfcidatascience. PhD @JHUCompSci. #hiring

[Li Song @mourisl]

BIG surprise from #RECOMB2024 ! What an honor to receive the best paper award! Thanks @RECOMBconf for this wonderful conference with so many interesting talks and posters, and @BenLangmead for many insightful discussions! (Full paper link :D https://t.co/AYD74ppifD)

[Li Song @mourisl]

Proud to turn a wet-lab PhD into the tool develop side. @IndianEwok has developed this super useful method RAD (https://t.co/QloH7uI1SQ) for sensitive and versatile long read demultiplexing, e.g. parsing barcode/UMI for single-cell Nanopore data! Fun to watch RAD from R->Rcpp->C.

[Chinmay Vaidya @IndianEwok]

i was gonna do a tweetorial or smthn of my first first-author paper (!!!) but got beaten to it by @razoralign , but i think i'm okay with that considering that's how *I* find my bioinformatics tools

[𝕐 @nomad421]

TFW you're reading a brand new preprint, and you know it's about to get real (https://t.co/VERE19C7a3).

[Li Song @mourisl]

My first co-corresponding author paper! Excited to contribute to this work on tracking ultra-rare lymphoma cells using TRUST4, which assembled BCRs for the SMART-seq2 data with the read length of only 35 bp.

[Andy Lane @lane_andy]

Our lab paper by Ran Xu @Ran47800515 now in print @BloodAdvances . New technology for ultra-rare MRD cell capture for mechanistic discovery:
Live-cell Pick-Seq (LiP-Seq): Interrogating ultra-rare mantle cell lymphoma persistent cells after CART19 therapy https://t.co/EKrLYaxXvI

[Linghua Wang, MD, PhD @IamLinghua]

1/ Thrilled to share our new paper, out today in @ScienceMagazine! We built a pan-cancer spatial atlas of tertiary lymphoid structures (TLSs) and developed computation and AI frameworks to study TLS biology at scale.
https://t.co/zgcBnnm7Rl

[Cell @CellCellPress]

Now online! Uncovering spatially resolved functional genomics with CRISPR screen sequencing https://t.co/EZw03UBnvl

[Boxiang Liu @boxiangliu]

If you are interested in single-cell splicing QTLs, it will be worth trying our new tool ISSAC.

Sharing my talk at the Biology of Genomes 2026.

Preprint: https://t.co/UE8MbyC2uV

[Feng Yue @yuefeng_1]

I’ve been serving as a Deputy Editor @ScienceAdvances since last October. In this role, I'll help build and expand submissions at the intersection of AI/machine learning and genomics/computational biology.

Feel free to reach out if you’d like to discuss future submissions.

[Linghua Wang, MD, PhD @IamLinghua]

😁 Excited to share our work on #BladderCancer, now online @CD_AACR! Led by brilliant postdoc Kai Yu🌟, jointly with Dr. JJ Gao @UTMDAnderson Huge thanks to @TaliLev123 & reviewers — only 4 months from submission to accepted manuscript online! Incredible!
https://t.co/ZIMfbLrZq7

[Yujie Zhang @YujieZh1729]

Great pleasure to work on this with Christina and have our AI therapeutic target discovery protocol published in Nature Protocols! Check it out here:

Nature Protocols link: https://t.co/6wUs1dDv4K
Google Colab: https://t.co/kJU9p4Gf1w

[Li Song @mourisl]

@AaronNewmanLab @Nature Congratulations!!! Kudos to @Wubing44589261

[Aaron Newman Lab @AaronNewmanLab]

1/ Thrilled to share our new paper, out today in @Nature: "Non-invasive profiling of the tumour microenvironment with spatial ecotypes".

Paper (open access): https://t.co/EujZFqU7wi

[Steven Salzberg 💙💛 @StevenSalzberg1]

In 1998, I talked to Craig Venter about the feasibility of sequencing the human genome as a whole-genome shotgun project. Here's a story about that conversation https://t.co/ci0kyDHf43

[Mile Sikic @msikic]

HERRO has been published in @Nature !!
https://t.co/zZFSuYvXq7

This achievement is a result of the great work by @domstanojevic, with contributions from @DehuiLin, @sergeynurk, and @PaolaFlorezdeS

We are entering the era of high-quality genome assemblies supported by AI. This is just the beginning.

[Heng Li @lh3lh3]

Blog post on "The AI Rewrite Dilemma": https://t.co/4NxIpNbYzR

[hansenhe @hansenhe7]

I am honored and humbled to receive the 2026 AACR Award for Outstanding Contribution to Basic Cancer Research. My award lecture will be 4:15-5pm today at AACR Room 5. I will share some recent progress on cancer epigenetics, RNA biology and RNA therapy

[Li Song @mourisl]

@hansenhe7 Congratulations!!!!

[Spencer Krieger @SpencerKrieger]

🧵 1/ Thrilled to announce I'm joining @BioMedDataSci @DartmouthGeisel as a tenure-track Assistant Professor in Biomedical Data Science! 🎉

[Li Song @mourisl]

@SpencerKrieger @BioMedDataSci Welcome!! Looking forward to working together!

[Chengxiang Qiu @CXchengxiangQIU]

New preprint! @JShendure @CXchengxiangQIU Can we learn regulatory grammars of human cell types we'll never be able to profile - by training on mouse development and transferring across 241 mammalian genomes?https://t.co/sWCWoAqJ2B

[Yan Gao @Ryan07GY]

New preprint on longcallD: a unified framework for joint calling and phasing of small, structural and mosaic variants from long reads. Improved SV calling and competitive small variant calling. Supervised by @lh3lh3 , co-work with @QianAlvinQin1, @wwliao88 and @irahall9.